IL_6P5I_145

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_145 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0642

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6P5I|1|5|C|1551
6P5I|1|5|G|1552
6P5I|1|5|A|1553
6P5I|1|5|A|1554
6P5I|1|5|G|1555
*
6P5I|1|5|U|1572
6P5I|1|5|G|1573
6P5I|1|5|G|1574
6P5I|1|5|A|1575
6P5I|1|5|G|1576

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AA

uL2

Chain AR

eL19

Chain Ap

eL43