IL_6P5I_158

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCUU*AAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_158 not in the Motif Atlas

Homologous match to IL_8C3A_508

Geometric discrepancy: 0.5778

The information below is about IL_8C3A_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07195.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6P5I|1|5|G|1753
6P5I|1|5|U|1754
6P5I|1|5|C|1755
6P5I|1|5|U|1756
6P5I|1|5|U|1757
*
6P5I|1|5|A|1775
6P5I|1|5|A|1776
6P5I|1|5|C|1777

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AD

uL18

Chain AI

uL16