IL_6P5I_164

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

6P5I|1|5|G|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_164 not in the Motif Atlas

Geometric match to IL_7D7V_002

Geometric discrepancy: 0.3815

The information below is about IL_7D7V_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6P5I|1|5|U|1918
6P5I|1|5|G|1919
6P5I|1|5|C|1920
*
6P5I|1|5|G|2063
6P5I|1|5|G|2064

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AF

uL30

Chain AM

L14e

Chain AO

uL13

Chain AS

eL20

Chain Af

eL33