IL_6P5I_170

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6P5I|1|5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_170 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.2753

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6P5I|1|5|G|2001
6P5I|1|5|A|2002
6P5I|1|5|G|2003
6P5I|1|5|U|2004
6P5I|1|5|G|2005
*
6P5I|1|5|C|2014
6P5I|1|5|U|2015
6P5I|1|5|C|2016

Current chains

Chain 5

28S rRNA

Nearby chains