IL_6P5I_190

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_190 not in the Motif Atlas

Homologous match to IL_8C3A_081

Geometric discrepancy: 0.083

The information below is about IL_8C3A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54997.8

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

8

Unit IDs

6P5I|1|5|A|2844
6P5I|1|5|A|2845
6P5I|1|5|G|2846
*
6P5I|1|5|C|3842
6P5I|1|5|C|3843
6P5I|1|5|U|3844

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AV

uL14

Chain AW

eL24