IL_6P5I_209

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6P5I|1|5|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_209 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.1194

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6P5I|1|5|U|3927
6P5I|1|5|A|3928
6P5I|1|5|G|3929
*
6P5I|1|5|U|4181
6P5I|1|5|G|4182
6P5I|1|5|G|4183
6P5I|1|5|G|4184

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AA

uL2

Chain AN

eL15

Chain Ao

eL42