IL_6P5I_219

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

6P5I|1|5|A|4292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_219 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.2782

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6P5I|1|5|G|4291
6P5I|1|5|A|4292
6P5I|1|5|U|4293
6P5I|1|5|C|4294
*
6P5I|1|5|G|4316
6P5I|1|5|A|4317
6P5I|1|5|C|4318

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AT

eL21

Chain Ab

eL29

Chain Ao

eL42