IL_6P5I_221

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

6P5I|1|5|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_221 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.2767

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6P5I|1|5|G|4347
6P5I|1|5|A|4348
6P5I|1|5|C|4349
6P5I|1|5|C|4350
*
6P5I|1|5|G|4364
6P5I|1|5|C|4365

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AL

eL13

Chain AQ

eL18

Chain Aa

uL15

Chain Ao

eL42