IL_6P5I_246

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCGGAUAGC*GUGCGGAGAG

Length

21 nucleotides

Bulged bases

6P5I|1|5|A|4764, 6P5I|1|5|G|4870, 6P5I|1|5|G|4873, 6P5I|1|5|A|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5I|1|5|C|4756
6P5I|1|5|C|4757
6P5I|1|5|U|4758
6P5I|1|5|C|4759
6P5I|1|5|G|4760
6P5I|1|5|G|4761
6P5I|1|5|A|4762
6P5I|1|5|U|4763
6P5I|1|5|A|4764
6P5I|1|5|G|4765
6P5I|1|5|C|4766
*
6P5I|1|5|G|4868
6P5I|1|5|U|4869
6P5I|1|5|G|4870
6P5I|1|5|C|4871
6P5I|1|5|G|4872
6P5I|1|5|G|4873
6P5I|1|5|A|4874
6P5I|1|5|G|4875
6P5I|1|5|A|4876
6P5I|1|5|G|4877

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AE

eL6

Chain AH

uL6

Chain AM

L14e

Chain AO

uL13

Chain AS

eL20