IL_6P5I_255

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

6P5I|1|5|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5I|1|5|U|5003
6P5I|1|5|C|5004
6P5I|1|5|G|5005
6P5I|1|5|U|5006
6P5I|1|5|A|5007
6P5I|1|5|C|5008
6P5I|1|5|G|5009
*
6P5I|1|5|U|5039
6P5I|1|5|U|5040
6P5I|1|5|G|5041
6P5I|1|5|A|5042
6P5I|1|5|A|5043
6P5I|1|5|A|5044

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AW

eL24

Chain Ad

eL31