IL_6P5I_268

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCCA*UUAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_268 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.3898

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6P5I|1|2|G|565
6P5I|1|2|U|566
6P5I|1|2|C|567
6P5I|1|2|C|568
6P5I|1|2|A|569
*
6P5I|1|2|U|581
6P5I|1|2|U|582
6P5I|1|2|A|583
6P5I|1|2|A|584
6P5I|1|2|C|585

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain Z

eS24