IL_6P5I_275

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCUCAGCGUG*CCGUUGAACCCC

Length

23 nucleotides

Bulged bases

6P5I|1|2|U|1585, 6P5I|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5I|1|2|G|1540
6P5I|1|2|G|1541
6P5I|1|2|C|1542
6P5I|1|2|U|1543
6P5I|1|2|C|1544
6P5I|1|2|A|1545
6P5I|1|2|G|1546
6P5I|1|2|C|1547
6P5I|1|2|G|1548
6P5I|1|2|U|1549
6P5I|1|2|G|1550
*
6P5I|1|2|C|1582
6P5I|1|2|C|1583
6P5I|1|2|G|1584
6P5I|1|2|U|1585
6P5I|1|2|U|1586
6P5I|1|2|G|1587
6P5I|1|2|A|1588
6P5I|1|2|A|1589
6P5I|1|2|C|1590
6P5I|1|2|C|1591
6P5I|1|2|C|1592
6P5I|1|2|C|1593

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain a

eS25

Chain e

eS29