IL_6P5I_289

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_289 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.0636

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6P5I|1|5|G|2847
6P5I|1|5|G|2848
6P5I|1|5|A|2849
6P5I|1|5|A|2850
6P5I|1|5|G|2851
6P5I|1|5|U|2852
6P5I|1|5|C|2853
6P5I|1|5|G|2854
6P5I|1|5|G|2855
*
6P5I|1|5|C|3837
6P5I|1|5|U|3838
6P5I|1|5|G|3839
6P5I|1|5|U|3840
6P5I|1|5|C|3841

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AV

uL14