IL_6P5I_299

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6P5I|1|5|U|492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_299 not in the Motif Atlas

Geometric match to IL_8TQX_002

Geometric discrepancy: 0.3718

The information below is about IL_8TQX_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6P5I|1|5|G|491
6P5I|1|5|U|492
6P5I|1|5|G|493
*
6P5I|1|5|C|661
6P5I|1|5|C|662

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AQ

eL18