IL_6P5N_013

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_013 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1777

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6P5N|1|2|U|116
6P5N|1|2|C|117
6P5N|1|2|C|118
6P5N|1|2|U|119
6P5N|1|2|U|120
6P5N|1|2|U|121
*
6P5N|1|2|A|343
6P5N|1|2|U|344
6P5N|1|2|U|345
6P5N|1|2|C|346
6P5N|1|2|G|347

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain J

eS8