IL_6P5N_015

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGAUAAC*GCUAAUACA

Length

17 nucleotides

Bulged bases

6P5N|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|2|U|144
6P5N|1|2|G|145
6P5N|1|2|G|146
6P5N|1|2|A|147
6P5N|1|2|U|148
6P5N|1|2|A|149
6P5N|1|2|A|150
6P5N|1|2|C|151
*
6P5N|1|2|G|167
6P5N|1|2|C|168
6P5N|1|2|U|169
6P5N|1|2|A|170
6P5N|1|2|A|171
6P5N|1|2|U|172
6P5N|1|2|A|173
6P5N|1|2|C|174
6P5N|1|2|A|175

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24