3D structure

PDB id
6P5N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUA*UA
Length
5 nucleotides
Bulged bases
6P5N|1|2|U|488
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5N_027 not in the Motif Atlas
Homologous match to IL_4V88_407
Geometric discrepancy: 0.2257
The information below is about IL_4V88_407
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

6P5N|1|2|U|487
6P5N|1|2|U|488
6P5N|1|2|A|489
*
6P5N|1|2|U|511
6P5N|1|2|A|512

Current chains

Chain 2
18S rRNA

Nearby chains

Chain F
eS4
Chain K
uS4
Chain Z
eS24

Coloring options:


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