IL_6P5N_029

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAC*GUAAU

Length

9 nucleotides

Bulged bases

6P5N|1|2|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_029 not in the Motif Atlas

Geometric match to IL_7MLW_007

Geometric discrepancy: 0.3843

The information below is about IL_7MLW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6P5N|1|2|A|529
6P5N|1|2|U|530
6P5N|1|2|A|531
6P5N|1|2|C|532
*
6P5N|1|2|G|552
6P5N|1|2|U|553
6P5N|1|2|A|554
6P5N|1|2|A|555
6P5N|1|2|U|556

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30