IL_6P5N_030

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGACU*AGGCCCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|2|A|533
6P5N|1|2|G|534
6P5N|1|2|G|535
6P5N|1|2|A|536
6P5N|1|2|C|537
6P5N|1|2|U|538
*
6P5N|1|2|A|545
6P5N|1|2|G|546
6P5N|1|2|G|547
6P5N|1|2|C|548
6P5N|1|2|C|549
6P5N|1|2|C|550
6P5N|1|2|U|551

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30