3D structure

PDB id
6P5N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AGGGCAAGUC*GCU
Length
13 nucleotides
Bulged bases
6P5N|1|2|U|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6P5N|1|2|A|599
6P5N|1|2|G|600
6P5N|1|2|G|601
6P5N|1|2|G|602
6P5N|1|2|C|603
6P5N|1|2|A|604
6P5N|1|2|A|605
6P5N|1|2|G|606
6P5N|1|2|U|607
6P5N|1|2|C|608
*
6P5N|1|2|G|635
6P5N|1|2|C|636
6P5N|1|2|U|637

Current chains

Chain 2
18S rRNA

Nearby chains

Chain D
uS5
Chain E
uS3
Chain K
uS4
Chain f
eS30

Coloring options:

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