3D structure

PDB id
6P5N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGC*GAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5N_044 not in the Motif Atlas
Geometric match to IL_3DIL_006
Geometric discrepancy: 0.2727
The information below is about IL_3DIL_006
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

6P5N|1|2|C|877
6P5N|1|2|G|878
6P5N|1|2|C|879
*
6P5N|1|2|G|907
6P5N|1|2|A|908
6P5N|1|2|G|909

Current chains

Chain 2
18S rRNA

Nearby chains

Chain AR
eL19

Coloring options:


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