IL_6P5N_046

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6P5N|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_046 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1155

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6P5N|1|2|G|924
6P5N|1|2|G|925
6P5N|1|2|A|926
6P5N|1|2|C|927
*
6P5N|1|2|G|1014
6P5N|1|2|U|1015
6P5N|1|2|U|1016
6P5N|1|2|U|1017
6P5N|1|2|U|1018

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

uS15

Chain c

eS27