3D structure

PDB id
6P5N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUAUU*AAGAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5N_049 not in the Motif Atlas
Geometric match to IL_4LFB_065
Geometric discrepancy: 0.1711
The information below is about IL_4LFB_065
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

6P5N|1|2|G|942
6P5N|1|2|U|943
6P5N|1|2|A|944
6P5N|1|2|U|945
6P5N|1|2|U|946
*
6P5N|1|2|A|980
6P5N|1|2|A|981
6P5N|1|2|G|982
6P5N|1|2|A|983
6P5N|1|2|C|984

Current chains

Chain 2
18S rRNA

Nearby chains

Chain AA
uL2
Chain C
eS1
Chain P
uS11
Chain b
eS26

Coloring options:


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