3D structure

PDB id
6P5N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AGGUUC*GUU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5N_051 not in the Motif Atlas
Geometric match to IL_4V88_435
Geometric discrepancy: 0.1802
The information below is about IL_4V88_435
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_22046.1
Basepair signature
cWW-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

6P5N|1|2|A|1042
6P5N|1|2|G|1043
6P5N|1|2|G|1044
6P5N|1|2|U|1045
6P5N|1|2|U|1046
6P5N|1|2|C|1047
*
6P5N|1|2|G|1071
6P5N|1|2|U|1072
6P5N|1|2|U|1073

Current chains

Chain 2
18S rRNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain AA
uL2
Chain Ap
eL43
Chain P
uS11
Chain b
eS26

Coloring options:


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