IL_6P5N_051
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGGUUC*GUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5N_051 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.1802
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6P5N|1|2|A|1042
6P5N|1|2|G|1043
6P5N|1|2|G|1044
6P5N|1|2|U|1045
6P5N|1|2|U|1046
6P5N|1|2|C|1047
*
6P5N|1|2|G|1071
6P5N|1|2|U|1072
6P5N|1|2|U|1073
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AA
- uL2
- Chain Ap
- eL43
- Chain P
- uS11
- Chain b
- eS26
Coloring options: