IL_6P5N_065

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCAUGG*UCUGUGAUGC

Length

18 nucleotides

Bulged bases

6P5N|1|2|C|1331, 6P5N|1|2|U|1494, 6P5N|1|2|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|2|G|1328
6P5N|1|2|U|1329
6P5N|1|2|G|1330
6P5N|1|2|C|1331
6P5N|1|2|A|1332
6P5N|1|2|U|1333
6P5N|1|2|G|1334
6P5N|1|2|G|1335
*
6P5N|1|2|U|1492
6P5N|1|2|C|1493
6P5N|1|2|U|1494
6P5N|1|2|G|1495
6P5N|1|2|U|1496
6P5N|1|2|G|1497
6P5N|1|2|A|1498
6P5N|1|2|U|1499
6P5N|1|2|G|1500
6P5N|1|2|C|1501

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain Aq

Eukaryotic peptide chain release factor subunit 1

Chain E

uS3

Chain L

eS10

Chain V

uS10

Chain e

eS29