IL_6P5N_069

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUGCUAA*UUAGAGG

Length

15 nucleotides

Bulged bases

6P5N|1|2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|2|C|1395
6P5N|1|2|A|1396
6P5N|1|2|U|1397
6P5N|1|2|G|1398
6P5N|1|2|C|1399
6P5N|1|2|U|1400
6P5N|1|2|A|1401
6P5N|1|2|A|1402
*
6P5N|1|2|U|1444
6P5N|1|2|U|1445
6P5N|1|2|A|1446
6P5N|1|2|G|1447
6P5N|1|2|A|1448
6P5N|1|2|G|1449
6P5N|1|2|G|1450

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain h

RACK1