IL_6P5N_078
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5N_078 not in the Motif Atlas
- Geometric match to IL_5MWI_007
- Geometric discrepancy: 0.1244
- The information below is about IL_5MWI_007
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
6P5N|1|2|G|1706
6P5N|1|2|U|1707
6P5N|1|2|C|1708
*
6P5N|1|2|G|1826
6P5N|1|2|U|1827
6P5N|1|2|C|1828
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- eL41
- Chain Aq
- Eukaryotic peptide chain release factor subunit 1
Coloring options: