IL_6P5N_118

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

6P5N|1|5|G|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_118 not in the Motif Atlas

Geometric match to IL_4LFB_036

Geometric discrepancy: 0.3355

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

6P5N|1|5|C|709
6P5N|1|5|G|710
*
6P5N|1|5|C|1286
6P5N|1|5|G|1287
6P5N|1|5|G|1288

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AE

eL6

Chain Af

eL33