IL_6P5N_126

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_126 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.2219

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6P5N|1|5|G|1074
6P5N|1|5|G|1075
6P5N|1|5|C|1076
*
6P5N|1|5|G|1235
6P5N|1|5|C|1236

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AE

eL6

Chain AF

L30

Chain Ab

eL29