IL_6P5N_152
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5N_152 not in the Motif Atlas
- Homologous match to IL_5TBW_041
- Geometric discrepancy: 0.143
- The information below is about IL_5TBW_041
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6P5N|1|5|A|1746
6P5N|1|5|U|1747
6P5N|1|5|U|1748
6P5N|1|5|A|1749
*
6P5N|1|5|U|1781
6P5N|1|5|U|1782
6P5N|1|5|C|1783
6P5N|1|5|U|1784
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- uL18
- Chain AI
- uL16
Coloring options: