IL_6P5N_165

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6P5N|1|5|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_165 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.5228

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6P5N|1|5|G|2001
6P5N|1|5|A|2002
6P5N|1|5|G|2003
6P5N|1|5|U|2004
6P5N|1|5|G|2005
*
6P5N|1|5|C|2014
6P5N|1|5|U|2015
6P5N|1|5|C|2016

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Am

eL40