IL_6P5N_166
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUG*CG
- Length
- 5 nucleotides
- Bulged bases
- 6P5N|1|5|U|2084
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5N_166 not in the Motif Atlas
- Geometric match to IL_4LFB_046
- Geometric discrepancy: 0.3007
- The information below is about IL_4LFB_046
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
6P5N|1|5|C|2083
6P5N|1|5|U|2084
6P5N|1|5|G|2085
*
6P5N|1|5|C|2272
6P5N|1|5|G|2273
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AC
- uL4
- Chain AF
- L30
- Chain AQ
- eL18
- Chain Ae
- eL32
Coloring options: