3D structure

PDB id
6P5N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUG*CG
Length
5 nucleotides
Bulged bases
6P5N|1|5|U|2084
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5N_166 not in the Motif Atlas
Geometric match to IL_4LFB_046
Geometric discrepancy: 0.3007
The information below is about IL_4LFB_046
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

6P5N|1|5|C|2083
6P5N|1|5|U|2084
6P5N|1|5|G|2085
*
6P5N|1|5|C|2272
6P5N|1|5|G|2273

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AC
uL4
Chain AF
L30
Chain AQ
eL18
Chain Ae
eL32

Coloring options:


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