IL_6P5N_186

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6P5N|1|5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_186 not in the Motif Atlas

Geometric match to IL_4V9F_062

Geometric discrepancy: 0.117

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6P5N|1|5|A|2850
6P5N|1|5|G|2851
6P5N|1|5|U|2852
6P5N|1|5|C|2853
6P5N|1|5|G|2854
6P5N|1|5|G|2855
*
6P5N|1|5|C|3837
6P5N|1|5|U|3838
6P5N|1|5|G|3839
6P5N|1|5|U|3840

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AV

uL14