IL_6P5N_205

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGUGUAGAAUAAGU*ACUACU

Length

21 nucleotides

Bulged bases

6P5N|1|5|A|3965

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|5|A|3954
6P5N|1|5|G|3955
6P5N|1|5|G|3956
6P5N|1|5|U|3957
6P5N|1|5|G|3958
6P5N|1|5|U|3959
6P5N|1|5|A|3960
6P5N|1|5|G|3961
6P5N|1|5|A|3962
6P5N|1|5|A|3963
6P5N|1|5|U|3964
6P5N|1|5|A|3965
6P5N|1|5|A|3966
6P5N|1|5|G|3967
6P5N|1|5|U|3968
*
6P5N|1|5|A|4053
6P5N|1|5|C|4054
6P5N|1|5|U|4055
6P5N|1|5|A|4056
6P5N|1|5|C|4057
6P5N|1|5|U|4058

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain AK

uL1

Chain Ai

eL36