IL_6P5N_213

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_213 not in the Motif Atlas

Homologous match to IL_5TBW_102

Geometric discrepancy: 0.1307

The information below is about IL_5TBW_102

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6P5N|1|5|G|4400
6P5N|1|5|G|4401
*
6P5N|1|5|U|4442
6P5N|1|5|C|4443
6P5N|1|5|C|4444

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AI

uL16

Chain Ab

eL29

Chain Aq

Eukaryotic peptide chain release factor subunit 1