IL_6P5N_226

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6P5N|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_226 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3238

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6P5N|1|5|C|4582
6P5N|1|5|C|4583
6P5N|1|5|A|4584
6P5N|1|5|U|4585
*
6P5N|1|5|A|4717
6P5N|1|5|G|4718
6P5N|1|5|G|4719
6P5N|1|5|C|4720
6P5N|1|5|G|4721

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AO

uL13