IL_6P5N_250
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAACGCG*CUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5N_250 not in the Motif Atlas
- Homologous match to IL_5TBW_373
- Geometric discrepancy: 0.147
- The information below is about IL_5TBW_373
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_10207.3
- Basepair signature
- cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6P5N|1|7|G|21
6P5N|1|7|A|22
6P5N|1|7|A|23
6P5N|1|7|C|24
6P5N|1|7|G|25
6P5N|1|7|C|26
6P5N|1|7|G|27
*
6P5N|1|7|C|52
6P5N|1|7|U|53
6P5N|1|7|A|54
6P5N|1|7|A|55
6P5N|1|7|G|56
6P5N|1|7|C|57
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- uL18
- Chain AJ
- uL11
Coloring options: