IL_6P5N_262

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACGGACAGGAUUGACAG*CUUUCUCGAUUCCGUG

Length

34 nucleotides

Bulged bases

6P5N|1|2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|2|C|1277
6P5N|1|2|A|1278
6P5N|1|2|C|1279
6P5N|1|2|G|1280
6P5N|1|2|G|1281
6P5N|1|2|A|1282
6P5N|1|2|C|1283
6P5N|1|2|A|1284
6P5N|1|2|G|1285
6P5N|1|2|G|1286
6P5N|1|2|A|1287
6P5N|1|2|U|1288
6P5N|1|2|U|1289
6P5N|1|2|G|1290
6P5N|1|2|A|1291
6P5N|1|2|C|1292
6P5N|1|2|A|1293
6P5N|1|2|G|1294
*
6P5N|1|2|C|1305
6P5N|1|2|U|1306
6P5N|1|2|U|1307
6P5N|1|2|U|1308
6P5N|1|2|C|1309
6P5N|1|2|U|1310
6P5N|1|2|C|1311
6P5N|1|2|G|1312
6P5N|1|2|A|1313
6P5N|1|2|U|1314
6P5N|1|2|U|1315
6P5N|1|2|C|1316
6P5N|1|2|C|1317
6P5N|1|2|G|1318
6P5N|1|2|U|1319
6P5N|1|2|G|1320

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain Q

uS19

Chain e

eS29

Chain g

eS31