3D structure

PDB id
6P5N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGGAAUG*CGAGAGA
Length
14 nucleotides
Bulged bases
6P5N|1|5|U|2661, 6P5N|1|5|A|2674
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5N_275 not in the Motif Atlas
Homologous match to IL_8P9A_301
Geometric discrepancy: 0.1503
The information below is about IL_8P9A_301
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_69543.3
Basepair signature
cWW-tSH-L-R-tSS-tHS-L-R-cWW
Number of instances in this motif group
3

Unit IDs

6P5N|1|5|U|2656
6P5N|1|5|G|2657
6P5N|1|5|G|2658
6P5N|1|5|A|2659
6P5N|1|5|A|2660
6P5N|1|5|U|2661
6P5N|1|5|G|2662
*
6P5N|1|5|C|2672
6P5N|1|5|G|2673
6P5N|1|5|A|2674
6P5N|1|5|G|2675
6P5N|1|5|A|2676
6P5N|1|5|G|2677
6P5N|1|5|A|2678

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AR
eL19
Chain AZ
eL27
Chain Ac
eL30
Chain Ag
eL34
Chain Ap
eL43
Chain O
uS15

Coloring options:


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