IL_6P5N_281

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAACGGGGCGG*CGCCCUCUCGCC

Length

25 nucleotides

Bulged bases

6P5N|1|5|C|4895, 6P5N|1|5|C|4921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5N|1|5|G|4890
6P5N|1|5|G|4891
6P5N|1|5|A|4892
6P5N|1|5|A|4893
6P5N|1|5|A|4894
6P5N|1|5|C|4895
6P5N|1|5|G|4896
6P5N|1|5|G|4897
6P5N|1|5|G|4898
6P5N|1|5|G|4899
6P5N|1|5|C|4902
6P5N|1|5|G|4903
6P5N|1|5|G|4904
*
6P5N|1|5|C|4918
6P5N|1|5|G|4919
6P5N|1|5|C|4920
6P5N|1|5|C|4921
6P5N|1|5|C|4922
6P5N|1|5|U|4923
6P5N|1|5|C|4924
6P5N|1|5|U|4925
6P5N|1|5|C|4926
6P5N|1|5|G|4927
6P5N|1|5|C|4928
6P5N|1|5|C|4929

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AE

eL6

Chain AM

L14e

Chain AO

uL13