IL_6PC5_113

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGCCUUGAUGUGUAGGAUAGG*CCCUUUAAUGUU

Length

33 nucleotides

Bulged bases

6PC5|1|I|C|2104, 6PC5|1|I|U|2111, 6PC5|1|I|G|2115, 6PC5|1|I|G|2116, 6PC5|1|I|A|2117, 6PC5|1|I|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC5|1|I|A|2101
6PC5|1|I|G|2102
6PC5|1|I|C|2103
6PC5|1|I|C|2104
6PC5|1|I|U|2105
6PC5|1|I|U|2106
6PC5|1|I|G|2107
6PC5|1|I|A|2108
6PC5|1|I|U|2109
6PC5|1|I|G|2110
6PC5|1|I|U|2111
6PC5|1|I|G|2112
6PC5|1|I|U|2113
6PC5|1|I|A|2114
6PC5|1|I|G|2115
6PC5|1|I|G|2116
6PC5|1|I|A|2117
6PC5|1|I|U|2118
6PC5|1|I|A|2119
6PC5|1|I|G|2120
6PC5|1|I|G|2121
*
6PC5|1|I|C|2177
6PC5|1|I|C|2178
6PC5|1|I|C|2179
6PC5|1|I|U|2180
6PC5|1|I|U|2181
6PC5|1|I|U|2182
6PC5|1|I|A|2183
6PC5|1|I|A|2184
6PC5|1|I|U|2185
6PC5|1|I|G|2186
6PC5|1|I|U|2187
6PC5|1|I|U|2188

Current chains

Chain I

23S ribosomal RNA

Nearby chains