3D structure

PDB id
6PC6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 47
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6PC6_006 not in the Motif Atlas
Geometric match to IL_5J7L_250
Geometric discrepancy: 0.0708
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6PC6|1|I|G|188
6PC6|1|I|G|189
6PC6|1|I|A|190
6PC6|1|I|A|191
6PC6|1|I|C|192
6PC6|1|I|U|193
6PC6|1|I|G|194
*
6PC6|1|I|C|201
6PC6|1|I|U|202
6PC6|1|I|A|203
6PC6|1|I|A|204
6PC6|1|I|G|205
6PC6|1|I|U|206
6PC6|1|I|A|207
6PC6|1|I|C|208

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L15

Coloring options:


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