IL_6PC6_029

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC6_029 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.3206

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6PC6|1|I|G|875
6PC6|1|I|C|876
6PC6|1|I|A|877
6PC6|1|I|A|878
6PC6|1|I|G|879
*
6PC6|1|I|C|898
6PC6|1|I|A|899
6PC6|1|I|A|900
6PC6|1|I|C|901
6PC6|1|I|C|902

Current chains

Chain I

23S ribosomal RNA

Nearby chains