IL_6PC6_043

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC6_043 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0644

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6PC6|1|I|A|1262
6PC6|1|I|U|1263
6PC6|1|I|A|1264
6PC6|1|I|A|1265
6PC6|1|I|G|1266
6PC6|1|I|U|1267
6PC6|1|I|A|1268
6PC6|1|I|A|1269
*
6PC6|1|I|U|2011
6PC6|1|I|G|2012
6PC6|1|I|A|2013
6PC6|1|I|A|2014
6PC6|1|I|A|2015
6PC6|1|I|U|2016
6PC6|1|I|U|2017

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4