IL_6PC6_072

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC6_072 not in the Motif Atlas

Geometric match to IL_7RQB_076

Geometric discrepancy: 0.1127

The information below is about IL_7RQB_076

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_59677.2

Basepair signature

cWW-cWW

Number of instances in this motif group

19

Unit IDs

6PC6|1|I|G|1933
6PC6|1|I|C|1934
*
6PC6|1|I|G|1964
6PC6|1|I|C|1965
6PC6|1|I|A|1966
6PC6|1|I|C|1967

Current chains

Chain I

23S ribosomal RNA

Nearby chains