3D structure

PDB id
6PC6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 47
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
AGG*CA(OMC)CU
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6PC6_085 not in the Motif Atlas
Homologous match to IL_5J7L_335
Geometric discrepancy: 0.1149
The information below is about IL_5J7L_335
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6PC6|1|I|A|2453
6PC6|1|I|G|2454
6PC6|1|I|G|2455
*
6PC6|1|I|C|2496
6PC6|1|I|A|2497
6PC6|1|I|OMC|2498
6PC6|1|I|C|2499
6PC6|1|I|U|2500

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain N
50S ribosomal protein L3

Coloring options:


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