IL_6PC7_006

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC7_006 not in the Motif Atlas

Geometric match to IL_7RQB_006

Geometric discrepancy: 0.0656

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6PC7|1|I|G|188
6PC7|1|I|G|189
6PC7|1|I|A|190
6PC7|1|I|A|191
6PC7|1|I|C|192
6PC7|1|I|U|193
6PC7|1|I|G|194
*
6PC7|1|I|C|201
6PC7|1|I|U|202
6PC7|1|I|A|203
6PC7|1|I|A|204
6PC7|1|I|G|205
6PC7|1|I|U|206
6PC7|1|I|A|207
6PC7|1|I|C|208

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15