IL_6PC7_108

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6PC7|1|I|U|846, 6PC7|1|I|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC7_108 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.3933

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6PC7|1|I|A|844
6PC7|1|I|A|845
6PC7|1|I|U|846
6PC7|1|I|U|847
6PC7|1|I|C|848
*
6PC7|1|I|G|930
6PC7|1|I|U|931
6PC7|1|I|U|932
6PC7|1|I|A|933
6PC7|1|I|U|934

Current chains

Chain I

23S ribosomal RNA

Nearby chains