IL_6PC7_113

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAGCCUUGAUGUGUAGGAUAGG*CCCUUUAAUGUUU

Length

35 nucleotides

Bulged bases

6PC7|1|I|C|2104, 6PC7|1|I|U|2111, 6PC7|1|I|G|2116, 6PC7|1|I|U|2118, 6PC7|1|I|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC7|1|I|G|2100
6PC7|1|I|A|2101
6PC7|1|I|G|2102
6PC7|1|I|C|2103
6PC7|1|I|C|2104
6PC7|1|I|U|2105
6PC7|1|I|U|2106
6PC7|1|I|G|2107
6PC7|1|I|A|2108
6PC7|1|I|U|2109
6PC7|1|I|G|2110
6PC7|1|I|U|2111
6PC7|1|I|G|2112
6PC7|1|I|U|2113
6PC7|1|I|A|2114
6PC7|1|I|G|2115
6PC7|1|I|G|2116
6PC7|1|I|A|2117
6PC7|1|I|U|2118
6PC7|1|I|A|2119
6PC7|1|I|G|2120
6PC7|1|I|G|2121
*
6PC7|1|I|C|2177
6PC7|1|I|C|2178
6PC7|1|I|C|2179
6PC7|1|I|U|2180
6PC7|1|I|U|2181
6PC7|1|I|U|2182
6PC7|1|I|A|2183
6PC7|1|I|A|2184
6PC7|1|I|U|2185
6PC7|1|I|G|2186
6PC7|1|I|U|2187
6PC7|1|I|U|2188
6PC7|1|I|U|2189

Current chains

Chain I

23S ribosomal RNA

Nearby chains