IL_6PC7_114

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGC*GGAGCCGACCUUGAAAUACCAC

Length

55 nucleotides

Bulged bases

6PC7|1|I|G|2128, 6PC7|1|I|U|2131, 6PC7|1|I|U|2132, 6PC7|1|I|A|2135, 6PC7|1|I|U|2139, 6PC7|1|I|G|2140, 6PC7|1|I|C|2145, 6PC7|1|I|C|2146, 6PC7|1|I|A|2158, 6PC7|1|I|C|2160, 6PC7|1|I|A|2163, 6PC7|1|I|C|2164, 6PC7|1|I|U|2167, 6PC7|1|I|A|2171, 6PC7|1|I|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC7|1|I|G|2121
6PC7|1|I|U|2122
6PC7|1|I|G|2123
6PC7|1|I|G|2124
6PC7|1|I|G|2125
6PC7|1|I|A|2126
6PC7|1|I|G|2127
6PC7|1|I|G|2128
6PC7|1|I|C|2129
6PC7|1|I|U|2130
6PC7|1|I|U|2131
6PC7|1|I|U|2132
6PC7|1|I|G|2133
6PC7|1|I|A|2134
6PC7|1|I|A|2135
6PC7|1|I|G|2136
6PC7|1|I|U|2137
6PC7|1|I|G|2138
6PC7|1|I|U|2139
6PC7|1|I|G|2140
6PC7|1|I|G|2141
6PC7|1|I|A|2142
6PC7|1|I|C|2143
6PC7|1|I|G|2144
6PC7|1|I|C|2145
6PC7|1|I|C|2146
6PC7|1|I|A|2147
6PC7|1|I|G|2148
6PC7|1|I|U|2149
6PC7|1|I|C|2150
6PC7|1|I|U|2151
6PC7|1|I|G|2152
6PC7|1|I|C|2153
*
6PC7|1|I|G|2156
6PC7|1|I|G|2157
6PC7|1|I|A|2158
6PC7|1|I|G|2159
6PC7|1|I|C|2160
6PC7|1|I|C|2161
6PC7|1|I|G|2162
6PC7|1|I|A|2163
6PC7|1|I|C|2164
6PC7|1|I|C|2165
6PC7|1|I|U|2166
6PC7|1|I|U|2167
6PC7|1|I|G|2168
6PC7|1|I|A|2169
6PC7|1|I|A|2170
6PC7|1|I|A|2171
6PC7|1|I|U|2172
6PC7|1|I|A|2173
6PC7|1|I|C|2174
6PC7|1|I|C|2175
6PC7|1|I|A|2176
6PC7|1|I|C|2177

Current chains

Chain I

23S ribosomal RNA

Nearby chains